Create mass_dataset class from other tools

data("mzmine_table")
object =
   convet_mzmine2mass_dataset(x = mzmine_table)
object
#> -------------------- 
#> massdataset version: 1.0.25 
#> -------------------- 
#> 1.expression_data:[ 3443 x 22 data.frame]
#> 2.sample_info:[ 22 x 2 data.frame]
#> 22 samples:10232_P4_RE4_01_476.mzXML Peak area 10765_P4_RE9_01_482.mzXML Peak area 10546_P4_RG11_01_515.mzXML Peak area ... 31878_P1_RH3_01_131.mzXML Peak area 14563_P1_RE10_01_99.mzXML Peak area
#> 3.variable_info:[ 3443 x 3 data.frame]
#> 3443 variables:1 2 3 ... 12248 12382
#> 4.sample_info_note:[ 2 x 2 data.frame]
#> 5.variable_info_note:[ 3 x 2 data.frame]
#> 6.ms2_data:[ 0 variables x 0 MS2 spectra]
#> -------------------- 
#> Processing information
#> 1 processings in total
#> create_mass_dataset ---------- 
#>       Package                Function.used                Time
#> 1 massdataset convet_mzmine2mass_dataset() 2023-09-03 10:28:19

data("msdial_table")
object =
   convert_msdial2mass_dataset(x = msdial_table)
object
#> -------------------- 
#> massdataset version: 1.0.25 
#> -------------------- 
#> 1.expression_data:[ 3751 x 20 data.frame]
#> 2.sample_info:[ 20 x 5 data.frame]
#> 20 samples:W03.01 W03.02 W03.03 ... W30.09 W30.10
#> 3.variable_info:[ 3751 x 32 data.frame]
#> 3751 variables:0 1 2 ... 6716 6717
#> 4.sample_info_note:[ 5 x 2 data.frame]
#> 5.variable_info_note:[ 32 x 2 data.frame]
#> 6.ms2_data:[ 0 variables x 0 MS2 spectra]
#> -------------------- 
#> Processing information
#> 1 processings in total
#> create_mass_dataset ---------- 
#>       Package                 Function.used                Time
#> 1 massdataset convert_msdial2mass_dataset() 2023-09-03 10:28:20

sessionInfo()
#> R version 4.3.0 (2023-04-21)
#> Platform: x86_64-apple-darwin20 (64-bit)
#> Running under: macOS Ventura 13.5.1
#> 
#> Matrix products: default
#> BLAS:   /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/lib/libRblas.0.dylib 
#> LAPACK: /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/lib/libRlapack.dylib;  LAPACK version 3.11.0
#> 
#> locale:
#> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
#> 
#> time zone: America/Los_Angeles
#> tzcode source: internal
#> 
#> attached base packages:
#> [1] stats     graphics  grDevices utils     datasets  methods   base     
#> 
#> other attached packages:
#> [1] kableExtra_1.3.4   ggplot2_3.4.2      dplyr_1.1.2        magrittr_2.0.3    
#> [5] masstools_1.0.10   massdataset_1.0.25
#> 
#> loaded via a namespace (and not attached):
#>   [1] bitops_1.0-7                pbapply_1.7-0              
#>   [3] remotes_2.4.2               rlang_1.1.1                
#>   [5] clue_0.3-64                 GetoptLong_1.0.5           
#>   [7] matrixStats_1.0.0           compiler_4.3.0             
#>   [9] systemfonts_1.0.4           png_0.1-8                  
#>  [11] vctrs_0.6.2                 rvest_1.0.3                
#>  [13] stringr_1.5.0               ProtGenerics_1.32.0        
#>  [15] pkgconfig_2.0.3             shape_1.4.6                
#>  [17] crayon_1.5.2                fastmap_1.1.1              
#>  [19] XVector_0.40.0              utf8_1.2.3                 
#>  [21] rmarkdown_2.22              tzdb_0.4.0                 
#>  [23] preprocessCore_1.62.1       purrr_1.0.1                
#>  [25] xfun_0.39                   zlibbioc_1.46.0            
#>  [27] cachem_1.0.8                GenomeInfoDb_1.36.0        
#>  [29] jsonlite_1.8.5              highr_0.10                 
#>  [31] DelayedArray_0.26.3         BiocParallel_1.34.2        
#>  [33] parallel_4.3.0              cluster_2.1.4              
#>  [35] R6_2.5.1                    stringi_1.7.12             
#>  [37] bslib_0.5.0                 RColorBrewer_1.1-3         
#>  [39] limma_3.56.2                GenomicRanges_1.52.0       
#>  [41] jquerylib_0.1.4             Rcpp_1.0.10                
#>  [43] bookdown_0.34               SummarizedExperiment_1.30.2
#>  [45] iterators_1.0.14            knitr_1.43                 
#>  [47] readr_2.1.4                 IRanges_2.34.0             
#>  [49] Matrix_1.5-4                tidyselect_1.2.0           
#>  [51] rstudioapi_0.14             yaml_2.3.7                 
#>  [53] doParallel_1.0.17           codetools_0.2-19           
#>  [55] affy_1.78.0                 blogdown_1.18.1            
#>  [57] lattice_0.21-8              tibble_3.2.1               
#>  [59] plyr_1.8.8                  withr_2.5.0                
#>  [61] Biobase_2.60.0              evaluate_0.21              
#>  [63] xml2_1.3.4                  zip_2.3.0                  
#>  [65] circlize_0.4.15             pillar_1.9.0               
#>  [67] affyio_1.70.0               BiocManager_1.30.21        
#>  [69] MatrixGenerics_1.12.2       foreach_1.5.2              
#>  [71] stats4_4.3.0                MSnbase_2.26.0             
#>  [73] MALDIquant_1.22.1           ncdf4_1.21                 
#>  [75] generics_0.1.3              rprojroot_2.0.3            
#>  [77] RCurl_1.98-1.12             hms_1.1.3                  
#>  [79] S4Vectors_0.38.1            munsell_0.5.0              
#>  [81] scales_1.2.1                glue_1.6.2                 
#>  [83] tools_4.3.0                 mzID_1.38.0                
#>  [85] vsn_3.68.0                  mzR_2.34.0                 
#>  [87] webshot_0.5.5               openxlsx_4.2.5.2           
#>  [89] XML_3.99-0.14               grid_4.3.0                 
#>  [91] impute_1.74.1               tidyr_1.3.0                
#>  [93] MsCoreUtils_1.12.0          colorspace_2.1-0           
#>  [95] GenomeInfoDbData_1.2.10     cli_3.6.1                  
#>  [97] fansi_1.0.4                 viridisLite_0.4.2          
#>  [99] S4Arrays_1.0.4              svglite_2.1.1              
#> [101] ComplexHeatmap_2.16.0       pcaMethods_1.92.0          
#> [103] gtable_0.3.3                sass_0.4.6                 
#> [105] digest_0.6.31               BiocGenerics_0.46.0        
#> [107] rjson_0.2.21                htmltools_0.5.5            
#> [109] lifecycle_1.0.3             httr_1.4.6                 
#> [111] here_1.0.1                  GlobalOptions_0.1.2        
#> [113] Rdisop_1.60.0               MASS_7.3-58.4