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S4 Class Representing a mass_dataset

Source: R/0-mass_dataset_class.R
mass_dataset-class.Rd

The mass_dataset class is designed to hold various types of data related to mass spectrometry experiments, including expression data, MS2 data, annotation tables, and other related information.

Slots

expression_data

A data.frame containing the expression data.

ms2_data

A list containing MS2 data.

annotation_table

A data.frame containing annotation information.

sample_info

A data.frame containing sample information.

variable_info

A data.frame containing variable information.

sample_info_note

A data.frame containing notes about the sample information.

variable_info_note

A data.frame containing notes about the variable information.

process_info

A list containing information about the data processing steps.

other_files

A list containing other related files.

version

A character string indicating the version of the dataset.

activated

A character string indicating which slot is currently activated for manipulation.

Examples

if (FALSE) { # \dontrun{
data("expression_data")
data("sample_info")
data("variable_info")
new_data <- create_mass_dataset(
  expression_data = expression_data,
  sample_info = sample_info,
  variable_info = variable_info
)
new_data
} # }