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massdataset is part of the tidymass ecosystem.


About

massdataset provides the mass_dataset class for organizing rectangular small-molecule profiling datasets in a consistent structure. It also provides core utilities for creating, accessing, combining, summarizing, and converting mass_dataset objects across the broader tidymass ecosystem.

Overview diagram of the massdataset workflow in the tidymass ecosystem.

massdataset is designed as an infrastructure package. It helps you keep imported datasets in a unified format before downstream analysis and makes it easier to move between different tidymass tools without rewriting data containers.

Installation

You can install the development version of massdataset from GitHub.

if(!require(remotes)){
install.packages("remotes")
}
remotes::install_github("tidymass/massdataset")

Additional installation details are available here.

Get started

Start with the online documentation:

massdataset articles

Need help?

If you have questions about massdataset, contact me by email or through the channels below.

WeChat: shenxt1990

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Citation

If you use massdataset in your publications, please cite this paper:

Shen, X., Yan, H., Wang, C. et al. TidyMass an object-oriented reproducible analysis framework for LC–MS data. Nat Commun 13, 4365 (2022).

Weblink

Thank you for using massdataset.