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Xiaotao Shen (https://www.shenxt.info/)

Created on 2021-12-04 and updated on 2022-03-21

demo_data.Rmd

Introduction

The demo data for tidymass is untargeted metabolomics by RPLC-QEplus (Thermo). 259 samples in total.

  • Subject samples: 220 blood samples. 110 control samples and 110 case samples.

  • QC samples: 39

Download demo data

1. MS1 data (mzXML format)

Download link.

Download and uncompress it:

2. MS2 data (mgf format)

Download link

Download and uncompress it:

3. Sample information

Download and uncompress it:

sample_info_pos

sample_info_pos is like below:

sample_id injection.order class batch subject_id group
sample_QC_01 1 QC 1 NA QC
sample_01 2 Subject 1 subject_474 Control
sample_02 3 Subject 1 subject_431 Control
sample_06 4 Subject 1 subject_414 Case
sample_07 5 Subject 1 subject_830 Control
sample_11 6 Subject 1 subject_125 Case
sample_QC_02 7 QC 1 NA QC
sample_12 8 Subject 1 subject_387 Case
sample_13 9 Subject 1 subject_834 Case
sample_14 10 Subject 1 subject_290 Case
sample_16 11 Subject 1 subject_656 Control
sample_19 12 Subject 1 subject_333 Control
sample_20 13 Subject 1 subject_403 Case
sample_22 14 Subject 1 subject_518 Case
sample_QC_03 15 QC 1 NA QC
sample_25 16 Subject 1 subject_854 Case
sample_26 17 Subject 1 subject_44 Case
sample_27 18 Subject 1 subject_774 Case
sample_28 19 Subject 1 subject_654 Control
sample_29 20 Subject 1 subject_257 Control
sample_30 21 Subject 1 subject_110 Case
sample_31 22 Subject 1 subject_450 Control
sample_QC_04 23 QC 1 NA QC
sample_34 24 Subject 1 subject_391 Control
sample_35 25 Subject 1 subject_381 Control
sample_36 26 Subject 1 subject_635 Case
sample_QC_05 27 QC 1 NA QC
sample_38 28 Subject 1 subject_476 Control
sample_39 29 Subject 1 subject_493 Case
sample_42 30 Subject 1 subject_676 Control
sample_43 31 Subject 1 subject_762 Case
sample_45 32 Subject 1 subject_258 Case
sample_46 33 Subject 1 subject_526 Control
sample_48 34 Subject 1 subject_848 Case
sample_49 35 Subject 1 subject_554 Control
sample_50 36 Subject 1 subject_389 Case
sample_QC_06 37 QC 1 NA QC
sample_51 38 Subject 1 subject_626 Case
sample_52 39 Subject 1 subject_764 Control
sample_55 40 Subject 1 subject_526 Case
sample_56 41 Subject 1 subject_534 Control
sample_57 42 Subject 1 subject_132 Control
sample_63 43 Subject 1 subject_341 Control
sample_64 44 Subject 1 subject_764 Case
sample_QC_07 45 QC 1 NA QC
sample_66 46 Subject 1 subject_531 Case
sample_67 47 Subject 1 subject_200 Case
sample_68 48 Subject 1 subject_748 Case
sample_71 49 Subject 1 subject_394 Control
sample_75 50 Subject 1 subject_87 Case
sample_QC_08 51 QC 1 NA QC
sample_76 52 Subject 1 subject_158 Control
sample_77 53 Subject 1 subject_474 Case
sample_78 54 Subject 1 subject_606 Control
sample_79 55 Subject 1 subject_774 Control
sample_80 56 Subject 1 subject_834 Control
sample_QC_09 57 QC 1 NA QC
sample_86 58 Subject 1 subject_270 Control
sample_87 59 Subject 1 subject_518 Control
sample_88 60 Subject 1 subject_780 Control
sample_89 61 Subject 1 subject_158 Case
sample_90 62 Subject 1 subject_552 Case
sample_93 63 Subject 1 subject_14 Control
sample_QC_10 64 QC 1 NA QC
sample_94 65 Subject 1 subject_405 Case
sample_95 66 Subject 1 subject_726 Case
sample_96 67 Subject 1 subject_114 Control
sample_97 68 Subject 1 subject_716 Control
sample_98 69 Subject 1 subject_389 Control
sample_100 70 Subject 1 subject_649 Control
sample_103 71 Subject 1 subject_330 Case
sample_104 72 Subject 1 subject_287 Control
sample_107 73 Subject 1 subject_602 Control
sample_QC_11 74 QC 1 NA QC
sample_108 75 Subject 1 subject_674 Control
sample_109 76 Subject 1 subject_405 Control
sample_110 77 Subject 1 subject_295 Control
sample_112 78 Subject 1 subject_295 Case
sample_115 79 Subject 1 subject_280 Control
sample_117 80 Subject 1 subject_793 Case
sample_QC_12 81 QC 1 NA QC
sample_119 82 Subject 1 subject_125 Control
sample_120 83 Subject 1 subject_674 Case
sample_122 84 Subject 1 subject_819 Case
sample_123 85 Subject 1 subject_656 Case
sample_124 86 Subject 1 subject_510 Control
sample_QC_13 87 QC 1 NA QC
sample_125 88 Subject 1 subject_149 Case
sample_127 89 Subject 1 subject_748 Control
sample_128 90 Subject 1 subject_257 Case
sample_129 91 Subject 1 subject_121 Case
sample_134 92 Subject 1 subject_525 Case
sample_135 93 Subject 1 subject_534 Case
sample_136 94 Subject 1 subject_694 Case
sample_QC_14 95 QC 1 NA QC
sample_138 96 Subject 1 subject_848 Control
sample_141 97 Subject 1 subject_620 Case
sample_142 98 Subject 1 subject_505 Control
sample_143 99 Subject 1 subject_391 Case
sample_144 100 Subject 1 subject_429 Case
sample_145 101 Subject 1 subject_415 Case
sample_147 102 Subject 1 subject_397 Control
sample_148 103 Subject 1 subject_160 Case
sample_QC_15 104 QC 1 NA QC
sample_149 105 Subject 1 subject_554 Case
sample_150 106 Subject 1 subject_525 Control
sample_152 107 Subject 1 subject_516 Case
sample_153 108 Subject 1 subject_573 Control
sample_156 109 Subject 1 subject_258 Control
sample_157 110 Subject 1 subject_132 Case
sample_160 111 Subject 1 subject_64 Case
sample_QC_16 112 QC 1 NA QC
sample_163 113 Subject 2 subject_415 Control
sample_164 114 Subject 2 subject_64 Control
sample_166 115 Subject 2 subject_341 Case
sample_167 116 Subject 2 subject_188 Case
sample_QC_17 117 QC 2 NA QC
sample_168 118 Subject 2 subject_394 Case
sample_171 119 Subject 2 subject_270 Case
sample_172 120 Subject 2 subject_205 Case
sample_173 121 Subject 2 subject_694 Control
sample_175 122 Subject 2 subject_819 Control
sample_176 123 Subject 2 subject_392 Case
sample_177 124 Subject 2 subject_17 Control
sample_178 125 Subject 2 subject_578 Control
sample_QC_18 126 QC 2 NA QC
sample_179 127 Subject 2 subject_458 Case
sample_180 128 Subject 2 subject_284 Case
sample_181 129 Subject 2 subject_410 Control
sample_182 130 Subject 2 subject_115 Case
sample_184 131 Subject 2 subject_392 Control
sample_185 132 Subject 2 subject_505 Case
sample_QC_19 133 QC 2 NA QC
sample_188 134 Subject 2 subject_790 Case
sample_189 135 Subject 2 subject_552 Control
sample_190 136 Subject 2 subject_828 Control
sample_193 137 Subject 2 subject_790 Control
sample_195 138 Subject 2 subject_429 Control
sample_197 139 Subject 2 subject_218 Case
sample_199 140 Subject 2 subject_870 Control
sample_201 141 Subject 2 subject_287 Case
sample_QC_20 142 QC 2 NA QC
sample_205 143 Subject 2 subject_561 Case
sample_208 144 Subject 2 subject_153 Case
sample_209 145 Subject 2 subject_356 Case
sample_210 146 Subject 2 subject_670 Control
sample_QC_21 147 QC 2 NA QC
sample_211 148 Subject 2 subject_561 Control
sample_212 149 Subject 2 subject_431 Case
sample_214 150 Subject 2 subject_564 Case
sample_215 151 Subject 2 subject_160 Control
sample_217 152 Subject 2 subject_247 Case
sample_219 153 Subject 2 subject_458 Control
sample_220 154 Subject 2 subject_449 Control
sample_QC_22 155 QC 2 NA QC
sample_221 156 Subject 2 subject_121 Control
sample_222 157 Subject 2 subject_368 Case
sample_223 158 Subject 2 subject_44 Control
sample_224 159 Subject 2 subject_348 Control
sample_225 160 Subject 2 subject_783 Control
sample_226 161 Subject 2 subject_500 Control
sample_228 162 Subject 2 subject_830 Case
sample_229 163 Subject 2 subject_87 Control
sample_230 164 Subject 2 subject_670 Case
sample_QC_23 165 QC 2 NA QC
sample_231 166 Subject 2 subject_544 Case
sample_232 167 Subject 2 subject_500 Case
sample_233 168 Subject 2 subject_488 Case
sample_234 169 Subject 2 subject_273 Case
sample_235 170 Subject 2 subject_410 Case
sample_237 171 Subject 2 subject_541 Case
sample_QC_24 172 QC 2 NA QC
sample_243 173 Subject 2 subject_654 Case
sample_244 174 Subject 2 subject_828 Case
sample_245 175 Subject 2 subject_649 Case
sample_247 176 Subject 2 subject_676 Case
sample_QC_25 177 QC 2 NA QC
sample_249 178 Subject 2 subject_716 Case
sample_251 179 Subject 2 subject_610 Case
sample_252 180 Subject 2 subject_403 Control
sample_253 181 Subject 2 subject_635 Control
sample_254 182 Subject 2 subject_330 Control
sample_255 183 Subject 2 subject_284 Control
sample_256 184 Subject 2 subject_533 Control
sample_257 185 Subject 2 subject_449 Case
sample_259 186 Subject 2 subject_381 Case
sample_260 187 Subject 2 subject_783 Case
sample_QC_26 188 QC 2 NA QC
sample_261 189 Subject 2 subject_606 Case
sample_262 190 Subject 2 subject_507 Case
sample_264 191 Subject 2 subject_14 Case
sample_265 192 Subject 2 subject_153 Control
sample_268 193 Subject 2 subject_115 Control
sample_270 194 Subject 2 subject_404 Control
sample_272 195 Subject 2 subject_493 Control
sample_QC_27 196 QC 2 NA QC
sample_274 197 Subject 2 subject_338 Control
sample_275 198 Subject 2 subject_573 Case
sample_276 199 Subject 2 subject_780 Case
sample_277 200 Subject 2 subject_428 Case
sample_282 201 Subject 2 subject_793 Control
sample_283 202 Subject 2 subject_726 Control
sample_284 203 Subject 2 subject_507 Control
sample_QC_28 204 QC 2 NA QC
sample_285 205 Subject 2 subject_488 Control
sample_286 206 Subject 2 subject_17 Case
sample_287 207 Subject 2 subject_854 Control
sample_288 208 Subject 2 subject_348 Case
sample_289 209 Subject 2 subject_508 Case
sample_290 210 Subject 2 subject_476 Case
sample_QC_29 211 QC 2 NA QC
sample_293 212 Subject 2 subject_368 Control
sample_297 213 Subject 2 subject_578 Case
sample_298 214 Subject 2 subject_602 Case
sample_299 215 Subject 2 subject_513 Case
sample_QC_30 216 QC 2 NA QC
sample_304 217 Subject 2 subject_414 Control
sample_309 218 Subject 2 subject_870 Case
sample_310 219 Subject 2 subject_531 Control
sample_311 220 Subject 2 subject_114 Case
sample_313 221 Subject 2 subject_280 Case
sample_314 222 Subject 2 subject_404 Case
sample_QC_31 223 QC 2 NA QC
sample_319 224 Subject 2 subject_516 Control
sample_320 225 Subject 2 subject_338 Case
sample_321 226 Subject 2 subject_510 Case
sample_322 227 Subject 2 subject_533 Case
sample_324 228 Subject 2 subject_273 Control
sample_325 229 Subject 2 subject_356 Control
sample_QC_32 230 QC 2 NA QC
sample_327 231 Subject 2 subject_290 Control
sample_QC_33 232 QC 2 NA QC
sample_47 233 Subject 2 subject_247 Control
sample_69 234 Subject 2 subject_188 Control
sample_QC_34 235 QC 2 NA QC
sample_QC_35 236 QC 2 NA QC
sample_QC_36 237 QC 2 NA QC
sample_40 238 Subject 2 subject_762 Control
sample_41 239 Subject 2 subject_218 Control
sample_60 240 Subject 2 subject_110 Control
sample_99 241 Subject 2 subject_387 Control
sample_101 242 Subject 2 subject_626 Control
sample_118 243 Subject 2 subject_149 Control
sample_QC_37 244 QC 2 NA QC
sample_174 245 Subject 2 subject_620 Control
sample_187 246 Subject 2 subject_544 Control
sample_191 247 Subject 2 subject_428 Control
sample_203 248 Subject 2 subject_564 Control
sample_204 249 Subject 2 subject_450 Case
sample_236 250 Subject 2 subject_508 Control
sample_279 251 Subject 2 subject_397 Case
sample_303 252 Subject 2 subject_205 Control
sample_QC_38 253 QC 2 NA QC
sample_315 254 Subject 2 subject_333 Case
sample_328 255 Subject 2 subject_541 Control
sample_329 256 Subject 2 subject_610 Control
sample_QC_39 257 QC 2 NA QC
sample_139 258 Subject 2 subject_513 Control
sample_131 259 Subject 2 subject_200 Control

sample_info_neg

sample_info_neg is like below:

sample_id injection.order class batch subject_id group
sample_QC_01 1 QC 1 NA QC
sample_01 2 Subject 1 subject_474 Control
sample_02 3 Subject 1 subject_431 Control
sample_06 4 Subject 1 subject_414 Case
sample_07 5 Subject 1 subject_830 Control
sample_11 6 Subject 1 subject_125 Case
sample_QC_02 7 QC 1 NA QC
sample_12 8 Subject 1 subject_387 Case
sample_13 9 Subject 1 subject_834 Case
sample_14 10 Subject 1 subject_290 Case
sample_16 11 Subject 1 subject_656 Control
sample_19 12 Subject 1 subject_333 Control
sample_20 13 Subject 1 subject_403 Case
sample_22 14 Subject 1 subject_518 Case
sample_QC_03 15 QC 1 NA QC
sample_25 16 Subject 1 subject_854 Case
sample_26 17 Subject 1 subject_44 Case
sample_27 18 Subject 1 subject_774 Case
sample_28 19 Subject 1 subject_654 Control
sample_29 20 Subject 1 subject_257 Control
sample_30 21 Subject 1 subject_110 Case
sample_31 22 Subject 1 subject_450 Control
sample_QC_04 23 QC 1 NA QC
sample_34 24 Subject 1 subject_391 Control
sample_35 25 Subject 1 subject_381 Control
sample_36 26 Subject 1 subject_635 Case
sample_QC_05 27 QC 1 NA QC
sample_38 28 Subject 1 subject_476 Control
sample_39 29 Subject 1 subject_493 Case
sample_42 30 Subject 1 subject_676 Control
sample_43 31 Subject 1 subject_762 Case
sample_45 32 Subject 1 subject_258 Case
sample_46 33 Subject 1 subject_526 Control
sample_48 34 Subject 1 subject_848 Case
sample_49 35 Subject 1 subject_554 Control
sample_50 36 Subject 1 subject_389 Case
sample_QC_06 37 QC 1 NA QC
sample_51 38 Subject 1 subject_626 Case
sample_52 39 Subject 1 subject_764 Control
sample_55 40 Subject 1 subject_526 Case
sample_56 41 Subject 1 subject_534 Control
sample_57 42 Subject 1 subject_132 Control
sample_63 43 Subject 1 subject_341 Control
sample_64 44 Subject 1 subject_764 Case
sample_QC_07 45 QC 1 NA QC
sample_66 46 Subject 1 subject_531 Case
sample_67 47 Subject 1 subject_200 Case
sample_68 48 Subject 1 subject_748 Case
sample_71 49 Subject 1 subject_394 Control
sample_75 50 Subject 1 subject_87 Case
sample_QC_08 51 QC 1 NA QC
sample_76 52 Subject 1 subject_158 Control
sample_77 53 Subject 1 subject_474 Case
sample_78 54 Subject 1 subject_606 Control
sample_79 55 Subject 1 subject_774 Control
sample_80 56 Subject 1 subject_834 Control
sample_QC_09 57 QC 1 NA QC
sample_86 58 Subject 1 subject_270 Control
sample_87 59 Subject 1 subject_518 Control
sample_88 60 Subject 1 subject_780 Control
sample_89 61 Subject 1 subject_158 Case
sample_90 62 Subject 1 subject_552 Case
sample_93 63 Subject 1 subject_14 Control
sample_QC_10 64 QC 1 NA QC
sample_94 65 Subject 1 subject_405 Case
sample_95 66 Subject 1 subject_726 Case
sample_96 67 Subject 1 subject_114 Control
sample_97 68 Subject 1 subject_716 Control
sample_98 69 Subject 1 subject_389 Control
sample_100 70 Subject 1 subject_649 Control
sample_103 71 Subject 1 subject_330 Case
sample_104 72 Subject 1 subject_287 Control
sample_107 73 Subject 1 subject_602 Control
sample_QC_11 74 QC 1 NA QC
sample_108 75 Subject 1 subject_674 Control
sample_109 76 Subject 1 subject_405 Control
sample_110 77 Subject 1 subject_295 Control
sample_112 78 Subject 1 subject_295 Case
sample_115 79 Subject 1 subject_280 Control
sample_117 80 Subject 1 subject_793 Case
sample_QC_12 81 QC 1 NA QC
sample_119 82 Subject 1 subject_125 Control
sample_120 83 Subject 1 subject_674 Case
sample_122 84 Subject 1 subject_819 Case
sample_123 85 Subject 1 subject_656 Case
sample_124 86 Subject 1 subject_510 Control
sample_QC_13 87 QC 2 NA QC
sample_125 88 Subject 2 subject_149 Case
sample_127 89 Subject 2 subject_748 Control
sample_128 90 Subject 2 subject_257 Case
sample_129 91 Subject 2 subject_121 Case
sample_134 92 Subject 2 subject_525 Case
sample_135 93 Subject 2 subject_534 Case
sample_136 94 Subject 2 subject_694 Case
sample_QC_14 95 QC 2 NA QC
sample_138 96 Subject 2 subject_848 Control
sample_141 97 Subject 2 subject_620 Case
sample_142 98 Subject 2 subject_505 Control
sample_143 99 Subject 2 subject_391 Case
sample_144 100 Subject 2 subject_429 Case
sample_145 101 Subject 2 subject_415 Case
sample_147 102 Subject 2 subject_397 Control
sample_148 103 Subject 2 subject_160 Case
sample_QC_15 104 QC 2 NA QC
sample_149 105 Subject 2 subject_554 Case
sample_150 106 Subject 2 subject_525 Control
sample_152 107 Subject 2 subject_516 Case
sample_153 108 Subject 2 subject_573 Control
sample_156 109 Subject 2 subject_258 Control
sample_157 110 Subject 2 subject_132 Case
sample_160 111 Subject 2 subject_64 Case
sample_QC_16 112 QC 2 NA QC
sample_163 113 Subject 2 subject_415 Control
sample_164 114 Subject 2 subject_64 Control
sample_166 115 Subject 2 subject_341 Case
sample_167 116 Subject 2 subject_188 Case
sample_QC_17 117 QC 2 NA QC
sample_168 118 Subject 2 subject_394 Case
sample_171 119 Subject 2 subject_270 Case
sample_172 120 Subject 2 subject_205 Case
sample_173 121 Subject 2 subject_694 Control
sample_175 122 Subject 2 subject_819 Control
sample_176 123 Subject 2 subject_392 Case
sample_177 124 Subject 2 subject_17 Control
sample_178 125 Subject 2 subject_578 Control
sample_QC_18 126 QC 2 NA QC
sample_179 127 Subject 2 subject_458 Case
sample_180 128 Subject 2 subject_284 Case
sample_181 129 Subject 2 subject_410 Control
sample_182 130 Subject 2 subject_115 Case
sample_184 131 Subject 2 subject_392 Control
sample_185 132 Subject 2 subject_505 Case
sample_188 133 Subject 2 subject_790 Case
sample_189 134 Subject 2 subject_552 Control
sample_QC_19 135 QC 2 NA QC
sample_190 136 Subject 2 subject_828 Control
sample_193 137 Subject 2 subject_790 Control
sample_195 138 Subject 2 subject_429 Control
sample_197 139 Subject 2 subject_218 Case
sample_199 140 Subject 2 subject_870 Control
sample_201 141 Subject 2 subject_287 Case
sample_QC_20 142 QC 2 NA QC
sample_205 143 Subject 2 subject_561 Case
sample_208 144 Subject 2 subject_153 Case
sample_209 145 Subject 2 subject_356 Case
sample_210 146 Subject 2 subject_670 Control
sample_QC_21 147 QC 2 NA QC
sample_211 148 Subject 2 subject_561 Control
sample_212 149 Subject 2 subject_431 Case
sample_214 150 Subject 2 subject_564 Case
sample_215 151 Subject 2 subject_160 Control
sample_217 152 Subject 2 subject_247 Case
sample_219 153 Subject 2 subject_458 Control
sample_220 154 Subject 2 subject_449 Control
sample_QC_22 155 QC 2 NA QC
sample_221 156 Subject 2 subject_121 Control
sample_222 157 Subject 2 subject_368 Case
sample_223 158 Subject 2 subject_44 Control
sample_224 159 Subject 2 subject_348 Control
sample_225 160 Subject 2 subject_783 Control
sample_226 161 Subject 2 subject_500 Control
sample_228 162 Subject 2 subject_830 Case
sample_229 163 Subject 2 subject_87 Control
sample_230 164 Subject 2 subject_670 Case
sample_QC_23 165 QC 2 NA QC
sample_231 166 Subject 2 subject_544 Case
sample_232 167 Subject 2 subject_500 Case
sample_233 168 Subject 2 subject_488 Case
sample_234 169 Subject 2 subject_273 Case
sample_235 170 Subject 2 subject_410 Case
sample_237 171 Subject 2 subject_541 Case
sample_QC_24 172 QC 2 NA QC
sample_243 173 Subject 2 subject_654 Case
sample_244 174 Subject 2 subject_828 Case
sample_245 175 Subject 2 subject_649 Case
sample_247 176 Subject 2 subject_676 Case
sample_QC_25 177 QC 2 NA QC
sample_249 178 Subject 2 subject_716 Case
sample_251 179 Subject 2 subject_610 Case
sample_252 180 Subject 2 subject_403 Control
sample_253 181 Subject 2 subject_635 Control
sample_254 182 Subject 2 subject_330 Control
sample_255 183 Subject 2 subject_284 Control
sample_256 184 Subject 2 subject_533 Control
sample_257 185 Subject 2 subject_449 Case
sample_259 186 Subject 2 subject_381 Case
sample_260 187 Subject 2 subject_783 Case
sample_QC_26 188 QC 2 NA QC
sample_261 189 Subject 2 subject_606 Case
sample_262 190 Subject 2 subject_507 Case
sample_264 191 Subject 2 subject_14 Case
sample_265 192 Subject 2 subject_153 Control
sample_268 193 Subject 2 subject_115 Control
sample_270 194 Subject 2 subject_404 Control
sample_272 195 Subject 2 subject_493 Control
sample_QC_27 196 QC 2 NA QC
sample_274 197 Subject 2 subject_338 Control
sample_275 198 Subject 2 subject_573 Case
sample_276 199 Subject 2 subject_780 Case
sample_277 200 Subject 2 subject_428 Case
sample_282 201 Subject 2 subject_793 Control
sample_283 202 Subject 2 subject_726 Control
sample_284 203 Subject 2 subject_507 Control
sample_QC_28 204 QC 2 NA QC
sample_285 205 Subject 2 subject_488 Control
sample_286 206 Subject 2 subject_17 Case
sample_287 207 Subject 2 subject_854 Control
sample_288 208 Subject 2 subject_348 Case
sample_289 209 Subject 2 subject_508 Case
sample_290 210 Subject 2 subject_476 Case
sample_QC_29 211 QC 2 NA QC
sample_293 212 Subject 2 subject_368 Control
sample_297 213 Subject 2 subject_578 Case
sample_298 214 Subject 2 subject_602 Case
sample_299 215 Subject 2 subject_513 Case
sample_QC_30 216 QC 2 NA QC
sample_304 217 Subject 2 subject_414 Control
sample_309 218 Subject 2 subject_870 Case
sample_310 219 Subject 2 subject_531 Control
sample_311 220 Subject 2 subject_114 Case
sample_313 221 Subject 2 subject_280 Case
sample_314 222 Subject 2 subject_404 Case
sample_QC_31 223 QC 2 NA QC
sample_319 224 Subject 2 subject_516 Control
sample_320 225 Subject 2 subject_338 Case
sample_321 226 Subject 2 subject_510 Case
sample_322 227 Subject 2 subject_533 Case
sample_324 228 Subject 2 subject_273 Control
sample_325 229 Subject 2 subject_356 Control
sample_QC_32 230 QC 2 NA QC
sample_327 231 Subject 2 subject_290 Control
sample_QC_33 232 QC 2 NA QC
sample_47 233 Subject 2 subject_247 Control
sample_69 234 Subject 2 subject_188 Control
sample_QC_34 235 QC 2 NA QC
sample_QC_35 236 QC 2 NA QC
sample_QC_36 237 QC 2 NA QC
sample_40 238 Subject 2 subject_762 Control
sample_41 239 Subject 2 subject_218 Control
sample_60 240 Subject 2 subject_110 Control
sample_99 241 Subject 2 subject_387 Control
sample_101 242 Subject 2 subject_626 Control
sample_118 243 Subject 2 subject_149 Control
sample_QC_37 244 QC 2 NA QC
sample_174 245 Subject 2 subject_620 Control
sample_187 246 Subject 2 subject_544 Control
sample_191 247 Subject 2 subject_428 Control
sample_203 248 Subject 2 subject_564 Control
sample_204 249 Subject 2 subject_450 Case
sample_236 250 Subject 2 subject_508 Control
sample_279 251 Subject 2 subject_397 Case
sample_303 252 Subject 2 subject_205 Control
sample_QC_38 253 QC 2 NA QC
sample_315 254 Subject 2 subject_333 Case
sample_328 255 Subject 2 subject_541 Control
sample_329 256 Subject 2 subject_610 Control
sample_QC_39 257 QC 2 NA QC
sample_139 258 Subject 2 subject_513 Control
sample_131 259 Subject 2 subject_200 Control

Session information 

sessionInfo()
#> R version 4.1.2 (2021-11-01)
#> Platform: x86_64-apple-darwin17.0 (64-bit)
#> Running under: macOS Big Sur 10.16
#> 
#> Matrix products: default
#> BLAS:   /Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libRblas.0.dylib
#> LAPACK: /Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libRlapack.dylib
#> 
#> locale:
#> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
#> 
#> attached base packages:
#> [1] stats     graphics  grDevices utils     datasets  methods   base     
#> 
#> other attached packages:
#> [1] magrittr_2.0.2   kableExtra_1.3.4
#> 
#> loaded via a namespace (and not attached):
#>  [1] tidyselect_1.1.1  xfun_0.29         bslib_0.3.1       purrr_0.3.4      
#>  [5] colorspace_2.0-2  vctrs_0.3.8       htmltools_0.5.2   viridisLite_0.4.0
#>  [9] yaml_2.3.4        utf8_1.2.2        rlang_1.0.1       pkgdown_2.0.2    
#> [13] jquerylib_0.1.4   pillar_1.7.0      glue_1.6.1        bit64_4.0.5      
#> [17] lifecycle_1.0.1   stringr_1.4.0     munsell_0.5.0     ragg_1.2.1       
#> [21] rvest_1.0.2       codetools_0.2-18  memoise_2.0.1     evaluate_0.15    
#> [25] knitr_1.37        tzdb_0.2.0        fastmap_1.1.0     parallel_4.1.2   
#> [29] fansi_1.0.2       highr_0.9         readr_2.1.2       scales_1.1.1     
#> [33] cachem_1.0.6      desc_1.4.0        vroom_1.5.7       webshot_0.5.2    
#> [37] jsonlite_1.7.3    systemfonts_1.0.3 fs_1.5.2          bit_4.0.4        
#> [41] textshaping_0.3.6 hms_1.1.1         digest_0.6.29     stringi_1.7.6    
#> [45] rprojroot_2.0.2   cli_3.2.0         tools_4.1.2       sass_0.4.0       
#> [49] tibble_3.1.6      crayon_1.5.0      pkgconfig_2.0.3   ellipsis_0.3.2   
#> [53] xml2_1.3.3        rmarkdown_2.11    svglite_2.0.0     httr_1.4.2       
#> [57] rstudioapi_0.13   R6_2.5.1          compiler_4.1.2