Data Quality Assessment Report

massqc from tidymass by Xiaotao Shen

2022-08-07

INTRODUCTION

massqc (version 0.01): Created in 2021 by Xiaotao Shen

PARAMETERS

Table 1: Parameter setting

pacakge_name function_name parameter time
massprocesser process_data path:cell_liang_2020/MS1/ 2022-08-07 16:44:28
massprocesser process_data polarity:positive 2022-08-07 16:44:28
massprocesser process_data ppm:10 2022-08-07 16:44:28
massprocesser process_data peakwidth:5,30 2022-08-07 16:44:28
massprocesser process_data snthresh:10 2022-08-07 16:44:28
massprocesser process_data prefilter:3,500 2022-08-07 16:44:28
massprocesser process_data fitgauss:FALSE 2022-08-07 16:44:28
massprocesser process_data integrate:2 2022-08-07 16:44:28
massprocesser process_data mzdiff:0.01 2022-08-07 16:44:28
massprocesser process_data noise:500 2022-08-07 16:44:28
massprocesser process_data threads:4 2022-08-07 16:44:28
massprocesser process_data binSize:0.025 2022-08-07 16:44:28
massprocesser process_data bw:5 2022-08-07 16:44:28
massprocesser process_data output_tic:TRUE 2022-08-07 16:44:28
massprocesser process_data output_bpc:TRUE 2022-08-07 16:44:28
massprocesser process_data output_rt_correction_plot:FALSE 2022-08-07 16:44:28
massprocesser process_data min_fraction:0.5 2022-08-07 16:44:28
massprocesser process_data fill_peaks:FALSE 2022-08-07 16:44:28
massdataset create_mass_dataset() no:no 2022-08-07 16:44:32

SAMPLE INFORMATION

#> -------------------- 
#> massdataset version: 1.0.12 
#> -------------------- 
#> 1.expression_data:[ 9164 x 14 data.frame]
#> 2.sample_info:[ 14 x 6 data.frame]
#> 3.variable_info:[ 9164 x 3 data.frame]
#> 4.sample_info_note:[ 6 x 2 data.frame]
#> 5.variable_info_note:[ 3 x 2 data.frame]
#> 6.ms2_data:[ 0 variables x 0 MS2 spectra]
#> -------------------- 
#> Processing information (extract_process_info())
#> 2 processings in total
#> create_mass_dataset ---------- 
#> process_data ----------